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Left image shows a spherical nucleo-capsid half-shell model of the Rice Dwarf Virus (RDV), using combined surface and volume rendering. The different colors show the nucleo-capsid shell from the outside.

Additional images for Virus-modeling
Link to Movie: RDV


Software

Graphical User Tools
  • TexMol - Molecular visualization and computation.
  • VolumeRover - Volumetric visualization package.
  • VolumeRoverN - Geometric and electrophysiological neuronal simulation and visualization package.
  • LBIE - Level Set Boundary-Interior-Exterior Meshing Tool.
  • Prism - Geometric modeling using algebraic patches.
  • GANITH - Algebraic geometry toolkit.

Software Libraries and Command-Line Utilities
  • MolSurf - Molecular surface generation and manipulation.
  • MolEnergy - Molecular energetics computation.
  • DPG - Dynamic packing grids.
  • SSEP - Secondary structure elucidation package.
  • Pocket/Tunnel - Protein pocket/tunnel extractor.
  • QHM - Quality Quadrilateral/Hexahedral Mesh Generator.
  • QTM - Quality Triangular/Tetrahedral Mesh Generator.
  • QMDM - Quality Multi-Domain Meshing with gap.
  • QMDMNG - Quality Multi-Domain Meshing with No Gap.
  • GPU Renderer - Surface/Volume Rendering Packages.
  • Shastra - X11 Based Scientific Toolkits.
  • Tracing/Tiling/Tetra - Arbitrary Topology Shape Reconstruction Library from Planar Cross Sections.
  • PFCorr - Polar Fourier Correlation.
  • PF2Fit - Polar Fast Fourier Rigid-body Fitting.
  • PF3Fit - Polar Fast Fourier Flexible Fitting.
  • PMEOPA - Parallel Molecular Energetics.
  • PGBFOPA - Parallel Generalized Born Force.

Server Based Codes
  • F2Dock - Protein docking software.
  • TRLIB - Texture-based Rendering Library.
  • ParIso - Fast Parallel Isosurface Rendering Library.
  • MTD - Server-Client based Multi-Tiled Display Library.
  • PVRC - Parallel Volume Ray Casting Library.