Example NAMD Configuration File for 1ACC

# NAMD configuration file for 1ACC

# molecular system
structure	out/1ACC002.psf
coordinates	out/1ACC002.pdb

# force field
paratypecharmm	on
parameters	data/par_all22_prot_na.inp
exclude		scaled1-4
1-4scaling	1.0

# approximations
switching	on
switchdist	8
cutoff		10
pairlistdist	13.5
margin		0
stepspercycle	20

# minimization
#minTinyStep 1.0e-8

#integrator
timestep 1.0

#output
outputenergies	200
outputtiming	200
binaryoutput	no

#output
outputname	out/1ACC/1ACC002
restartname out/1ACC/1ACC002
restartfreq 100
restartsave yes
binaryrestart no
dcdfreq		100

#protocol
temperature	0
reassignFreq	100
reassignTemp	25
reassignIncr	25
reassignHold	300

#script
minimize 2000
run 40000