Journal Publications

Z. Yu, C. Bajaj, M. Hoshijima, M. Holst, T. Hayashi, M. Ellisman, J. McCammon
Three-Dimensional Geometric Modeling of Membrane-bound Organelles in Ventricular Myocytes: Bridging the Gap between Microscopic Imaging and Mathematical Simulation
Journal of Structural Biology, 164(3):304-13, 2008, http://tinyurl.com/PMC2790379, PMCID: PMC2790379 (pdf) (abstract)

J. Oden, K. Diller, C.Bajaj, J. Browne, J. Hazle, I. Babuska, J. Bass, L. Demkowicz, A. Elliott, Y. Feng, D. Fuentes, S. Prudhomme, M. Rylander, R. Stafford, Y. Zhang
Dynamic Data-Driven Finite Element Models for Laser Treatment of Cancer
Journal of Numerical Methods for Partial Differential Equations, 23 (4) 901-922, 2007, doi: 10.1002/num.20251, http://tinyurl.com/NIHMS92557, PMCID: PMC2850081

Y. Cheng, J. Suen, D. Zhang, S. Bond, Y. Zhang, Y. Song, N. Baker, C. Bajaj, M. Holst, J. McCammon
Finite element analysis of the time-dependent Smoluchowski equation for acetylcholinesterase reaction rate calculations
Biophysical Journal, 92: 3397-3406, 2007, doi:10.1529/biophysj.106.102533, http://tinyurl.com/PMC1853150, PMCID: PMC1853150 (pdf) (abstract)

Y. Zhang, Y. Bazilives, S. Goswami, T. Hughes, C. Bajaj
Patient-Specific Vascular NURBS Modeling for Isogeometric Analysis of Blood Flow
Computer Methods in Applied Mechanics and Engineering (CMAME), 196 (29-30) 2943-2959. 2007, doi: 10.1007/978-3-540-34958-7, NIHMSID 87598, http://tinyurl.com/PMC2839408, PMCID: PMC2839408

X. Zhang, C. Bajaj, B. Kwon, T. Dolinsky, J. Nielsen, N. Baker
Application of New Multiresolution Methods for the Comparison of Biomolecular Electrostatic Properties in the Absence of Structural Similarity
Multiscale Modeling and Simulation, 2006, 5 (4), 1196-1213, doi: 10.1137/050647670, http://tinyurl.com/PMC2561295, PMCID: PMC2561295 (pdf) (abstract)

J. T. Oden, K. R. Diller, C. Bajaj, J. C. Browne, J. Hazle, I. Babuska, J. Bass, L. Demkowicz, Y. Feng, D. Fuentes, S. Prudhomme, M. N. Rylander, R. J. Stafford, Y. Zhang
Development of a Computational Paradigm for Laser Treatment of Cancer
Lecture Notes in Computer Science, 3993: 530-537, 2006, doi: 10.1007/11758532_70, http://tinyurl.com/PMC2676779, PMCID: PMC2676779 (pdf) (abstract) (Related CVC Project)

W. Liu, Y. Liu, D. Farrell, L. Zhang, X. Wang, Y. Fukui, N. Patankar, Y. Zhang, C. Bajaj, J. Lee, J. Hong, X. Chen, H. Hsu
Immersed finite element method and its applications to biological systems
Computer Methods In Applied Mechanics and Engineering (CMAME), 195: 1722-1749, 2006, doi:10.1016/j.cma.2005.05.049, http://tinyurl.com/PMC2830735, PMCID: PMC2830735 (pdf) (abstract)

D. Zhang, J. Suen, Y. Zhang, Y. Song, Z. Radic, P. Taylor, M. Holst, C. Bajaj, N. Baker, J. McCammon
Tetrameric Mouse Acetylcholinesterase: Continuum Diffusion Rate Calculations by Solving the Steady-State Smoluchowski Equation Using Finite Element Methods
Biophys. J. 88, 1659-1665 (2005), doi: 10.1529/biophysj.104.053850, http://tinyurl.com/PMC1305222, PMCID: PMC1305222 (pdf) (abstract)

C. Bajaj, G. Xu
Adaptive Surfaces Fairing by Geometric Diffusion
Geometric Modeling: Techniques, Applications, Systems and Tools, 2004, M. Sarfraz(ed), Kluwer Academic Publishers, ISBN: 1-4020-1817-7, Pages 32-49. (pdf) (abstract)

Y. Song, Y. Zhang, C. Bajaj, N. Baker
Continuum Diffusion Reaction Rate Calculations of Wild Type and Mutant Mouse Acetylcholinesterase: Adaptive Finite Element Analysis
Biophysical Journal, 87(3):1558-1566, 2004, doi: 10.1529/biophysj.104.041517, http://tinyurl.com/PMC1304562, PMCID: PMC1304562 (pdf)

Y. Song, Y. Zhang, T. Shen, C. Bajaj, J. McCammon, N. Baker
Finite Element Solution of the Steady-State Smoluchowski Equation for Rate Constant Calculations
Biophysical Journal, 86(4):2017-2029, 2004, doi: 10.1529/biophysj.106.102533, http://tinyurl.com/PMC1304055, PMCID: PMC1304055 (pdf) (abstract)

C. Bajaj, I. Ihm, J. Min, J. Oh
SIMD Optimization of Linear Expressions for Programmable Graphics Hardware
Computer Graphics Forum, 23, 4(2004), 1-18, doi: 10.1111/j.1467-8659.2004.00803.x, http://tinyurl.com/PMC2782869, PMCID: PMC2782869. (pdf)

C. Bajaj, G. Xu
Anisotropic Diffusion of Surfaces and Functions on Surfaces
ACM Transactions on Graphics, 22, 1, (2003), 4-32. (pdf)

C. Bajaj, G. Xu
Adaptive fairing of surface meshes by geometric diffusion
Proceedings of Fifth International Conference on Information Visualisation, 2001. 25-27 July 2001. Page(s):731 - 737. (pdf)

C. Bajaj, G. Xu
Anisotropic Diffusion of Noisy Surfaces and Noisy Functions on Surfaces
Proc. of Information Visualization 2001, London, UK, 2001. (pdf)

C. Bajaj, I. Ihm, S. Park
Compression-Based 3D Texture Mapping for Real-Time Rendering
Graphical Models, 62:6, (2000), 391-410. (pdf) (abstract)

Conference Presentations & Publications

C. Bajaj, R. Bettadapura, N. Lei, A. Mollere, C. Peng, A. Rand
Constructing A-Spline Weight Functions for Stable WEB-Spline Finite Element Methods
Proceedings of the ACM Symposium on Solid and Physical Modeling, Sept. 2010, Accepted for Publication.

C. Bajaj and R. Chowdhury
Multi-level Grid Algorithms for Faster Molecular Energetics
Proceedings of the ACM Symposium on Solid and Physical Modeling, Sept. 2010, Accepted for Publication

C. Bajaj, R. Chowdhury, M. Rasheed
A Dynamic Data Structure for Flexible Molecular Maintenance and Informatics
Proceedings of the 2009 SIAM/ACM Joint Conference on Geometric and Physical Modeling, San Francisco, CA, 2009, NIHMSID193756, PMC Journal in Process (pdf)

C. Bajaj, A. Chen, G. Xu, Q. Zhang, W. Zhao
Hierarchical Molecular Interfaces and Solvation Electrostatics
Proceedings of the 2009 SIAM/ACM Joint Conference on Geometric and Physical Modeling, San Francisco, CA, 2009, NIHMSID193754, PMC Journal in Process (pdf)

J. T. Oden, K. R. Diller, C. Bajaj, J. C. Browne, J. Hazle, I. Babuska, J. Bass, L. Demkowicz, Y. Feng, D. Fuentes, S. Prudhomme, M. N. Rylander, R. J. Stafford, Y. Zhang
Development of a Computational Paradigm for Laser Treatment of Cancer
International Conference on Computational Science (3): 530-537, 2006, NIHMSID194039, PMC Journal in Process (pdf) (abstract) (Related CVC Project)

Y. Bazilevs, Y. Zhang, V. Calo, S. Goswami, C. Bajaj, T. Hughes
Isogeometric Analysis of Blood Flow: a NURBS-based Approach
Proceedings of 15th International Meshing Roundtable, pp. 73-92, Birmingham, AL. September 17-20, 2006, NIHMSID194040, PMC Journal in Process (pdf)

B. Kang, I. Ihm, C. Bajaj
Extending the Photon Mapping Method for Realistic Rendering of Hot Gaseous Fluids
Computer Animation and Virtual Worlds (CASA 2005), 16, 3, 353-363. (pdf) (abstract)

Z. Yu, C. Bajaj
A Segmentation-Free Approach for Skeletonization of Gray-Scale Images via Anisotropic Vector Diffusion
Proceedings of 2004 IEEE International Conference on Computer Vision and Pattern Recognition (CVPR'04), Volume 1, Pages 415-420, Washington, DC. (pdf) (abstract)

Y. Shin, C. Bajaj
Auralization I: Vortex Sound Synthesis
Proceedings of Symposium on Visualization, Joint Eurographics - IEEE TCVG, VisSym 2004, Symposium on Visualization, pp. 193-200, Konstanz, Germany, May 19-21, 2004. Eurographics Association 2004, ISBN 3-905673-07-X. (pdf) (ps) (abstract)

C. Bajaj, G. Xu, J. Warren
Acoustics Scattering on Arbitrary Manifold Surfaces
Geometric Modeling and Processing, Theory and Application 2002, Japan, Pages 73-82. (pdf) (abstract)

Z. Yu, C. Bajaj
Anisotropic Vector Diffusion in Image Smoothing
Proceeding of the 9th IEEE International Conference on Image Processing, vol. 1, pp. 828-831, (Published by IEEE CS Press), Rochester, New York, September 22-25, 2002. (pdf)

Z. Yu, C. Bajaj
Image Segmentation Using Gradient Vector Diffusion and Region Merging
Proceedings of the 16th International Conference on Pattern Recognition, vol. 2, pp. 941-944, (Published by IEEE CS-Press), Quebec, Canada, August 11-15, 2002. (pdf)

Z. Yu, C. Bajaj
Normalized Gradient Vector Diffusion and Image Segmentation
Proceedings of the 7th European Conference on Computer Vision (LNCS 2352), vol. 3, pp. 517-530, (Published by Springer Press), Copenhagen, Denmark, May 28-31, 2002. (pdf)

C. Bajaj, F. Bernardini, K. Lin, E. Sacks, D. Schikore
Physical Simulation of the Visible Human Joints
The Visible Human Project Conference, 1996. (ps)

C. Bajaj, D. Schikore
Custom Prosthesis Design, Visualization, and Prototyping
Proceedings of SPIE, Volume 2359. Visualization in Biomedical Computing 1994, Richard A. Robb, Editor, September 1994, pp. 504-510. (pdf) (ps)

C. Bajaj, D. Schikore
Distributed Design of Hip Prosthesis using BHAUTIK
Proceedings: The 1993 ACM/SIGAPP Symposium on Applied Computing, (1993), Indianapolis, Indiana, ACM Press, 36-39. (pdf)

V. Anupam, C. Bajaj, S. Cutchin, S. Evans, I. Ihm, J. Chen, A. Royappa, D. Schikore, G. Xu
Scientific Problem Solving in a Distributed and Collaborative Geometric Environment
3rd International Conference on Expert Systems for Numerical Computing, May 17-19, 1993, West Lafayette, IN.

C. Bajaj, W. Dyksen, C. Hoffmann, E. Houstis, T. Korb, J. Rice
Computing About Physical Objects
Proceedings: The 12th IMACS World Congress, Paris, (1988), 642-645.

Book Chapters

C. Bajaj, G. Xu
Smooth Shell Construction with Mixed Prism Fat Surfaces
Brunett, G., Bieri,H., Farin, G. (eds.), Geometric Modeling Computing Supplement, 14, (2001), 19-35. (pdf) (ps)