mobios.type
Class Peptide
java.lang.Object
mobios.type.Sequence
mobios.type.Peptide
- All Implemented Interfaces:
- Serializable
public class Peptide
- extends Sequence
A Peptide
is a compact representation of a AminoAcids sequence(Peptide). Each AminoAcids is stored as a byte.
- Version:
- 2003.06.06
- Author:
- Rui Mao
- See Also:
- Serialized Form
ALPHABET
public static final Alphabet ALPHABET
mPAM250aExtendedWeightMatrix
public static final WeightMatrix mPAM250aExtendedWeightMatrix
Peptide
public Peptide(String sequenceID,
String sequence)
Peptide
public Peptide(String sequence)
getAlphabet
public Alphabet getAlphabet()
- Specified by:
getAlphabet
in class Sequence
- Returns:
main
public static void main(String[] args)
get
public Symbol get(int index)
- Specified by:
get
in class Sequence
- Parameters:
index
- an integer index value
- Returns:
- the
Symbol
corresponding to that index.
toString
public String toString()
- Specified by:
toString
in class Sequence
(C) 2002 - 2006 The MoBIoS Group